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Folders Not Showing up in Windows File Explorer

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So, I have been having this weird thing happen to my pool lately. 

 

I have 5 hard drives in one pool with no duplication set. I use the combined pool for movies, TV shows, Music, and 3D movies for Plex. 

Lately, when I add movies in the movies folder in the pool, I am unable to find it using File Explorer. No matter what I do ( show hidden files, show hidden operating System files) it still will not show up. 

The only way I am able to see the folder(s) I just added is by searching for it. It will show me the folder in the search result, but if I right click and click show containing folder, again it does not show up. 

As a result plex is also unable to find the folders to notice a new movie has been added. 

 

This is where it gets weirder. If I add TV shows to the TV shows folder, or music, I am able to see them in File explorer and Plex finds it too. 

And in some cases I am unable to find the folder or it's content at all. 

Please see attached pictures.

 

Is there a solution for this?

 

Thank You.

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